CyTOForum

"Multi-modal image analysis for large scale cancer tissue studies within IMMUcan"
Daniel Schulz, Nils Eling, Julien Dorier, Sylvie Rusakiewicz, Preethi Devanand, Michelle Daniel, Jonas Windhager, Bruno Palau Fernandez, Sophie Deglise, Lucie Despland, Abdelkader Benyagoub, Sasha Loboda, Daaf Sandkuijl, Nikesh Parsotam, Henoch S Hong, Marie Morfouace, Nicolas Guex, George Coukos, Bernd Bodenmiller, Stephanie Tissot
bioRxiv, posted January 03, 2025
https://doi.org/10.1101/2024.12.16.628597

- will update when/if this is peer-reviewed and published

- "IMC Panel 1 ground truth annotated data can be found here: https://zenodo.org/records/12912567 "
- appears to be subset of the large scale study

Now published:

Cell Rep Methods. 2025
https://doi.org/10.1016/j.crmeth.2025.101170

- "Data and code availability All data have been deposited at Zenodo: mIF and IMC data to reproduce this publication (Zenodo: https://doi.org/10.5281/zenodo.15855866), mIF images and IFQuant parameters for those images (Zenodo: https://zenodo.org/records/12699335), and the manually annotated IMC images (Zenodo: https://doi.org/10.5281/zenodo.12912567)."

- new Zenodo: https://doi.org/10.5281/zenodo.15855866 does contain TIFFs