2022-Lu et al-preprint
Posted: Mon Jul 25, 2022 3:46 pm"IMC-Denoise: a content aware denoising pipeline to enhance Imaging Mass Cytometry"
Peng Lu, Karolyn A Oetjen, Diane E Bender, Marianna B Ruzinova, Daniel AC Fisher, Kevin G Shim, Russell K Pachynski, W Nathaniel Brennen, Stephen Oh, Daniel C Link, Daniel LJ Thorek
bioRxiv, posted July 22, 2022
https://doi.org/10.1101/2022.07.21.501021
- will update when/if this is peer-reviewed and published
- "We demonstrate theflexibility and effectiveness of the proposed pipeline on publicly available IMC datasets of pancreatic cancer [10], breast cancer [12], a MIBI dataset [19], and a technically challenging unique human bone marrow dataset."
pancreatic cancer: 2019-Wang et al- Cell Metab
breast cancer: 2020-Jackson et al-Nature
MIBI dataset: 2021-Baranski et al-PLoS Comput Biol
Human Bone Marrow: "The human bone marrow IMC data and simulated data are available from Zenodo https://doi.org/10.5281/zenodo.6533905. "
Peng Lu, Karolyn A Oetjen, Diane E Bender, Marianna B Ruzinova, Daniel AC Fisher, Kevin G Shim, Russell K Pachynski, W Nathaniel Brennen, Stephen Oh, Daniel C Link, Daniel LJ Thorek
bioRxiv, posted July 22, 2022
https://doi.org/10.1101/2022.07.21.501021
- will update when/if this is peer-reviewed and published
- "We demonstrate theflexibility and effectiveness of the proposed pipeline on publicly available IMC datasets of pancreatic cancer [10], breast cancer [12], a MIBI dataset [19], and a technically challenging unique human bone marrow dataset."
pancreatic cancer: 2019-Wang et al- Cell Metab
breast cancer: 2020-Jackson et al-Nature
MIBI dataset: 2021-Baranski et al-PLoS Comput Biol
Human Bone Marrow: "The human bone marrow IMC data and simulated data are available from Zenodo https://doi.org/10.5281/zenodo.6533905. "