2021-Xiao et al-preprint

[mleipold]

"IMCellXMBD: A statistical approach for robust cell identification and quantification from imaging mass cytometry images"
Xu Xiao, Naifei Su, Yan Kong, Lei Zhang, Xin Ding, Wenxian Yang, Rongshan Yu
bioRxiv, posted September 27, 2021
https://doi.org/10.1101/2021.09.27.461899

- will update when/if this is peer-reviewed and published

- employs Dice-XMBD as part of the workflow (https://doi.org/10.1101/2021.06.05.447183)

- no IMC dataset accession given

[mleipold]

Now published:

"A Statistical Approach for Improving Image Quality and Cell Quantification from Imaging Mass Cytometry,"
X. Xiao, Y. Lin, L. Zhang, W. Yang and R. Yu
2024 9th International Conference on Communication, Image and Signal Processing (CCISP), Gold Coast, Australia, 2024, 62-66
https://doi.org/10.1109/CCISP63826.2024.10765537

- "Two IMC datasets collected independently from the same laboratory were used for methods evaluation. One dataset consists of tissue sections from melanoma patients (Melan [18]), while the other dataset is from tissue sections of patients with colorectal liver metastasis (CRLM)."
- Melanoma: reuses 2022-Xiao et al-Commun Med
- colorectal liver metastasis (CRLM): no dataset accession given