Thu Nov 14, 2024 5:42 pm
2024-Wang et al-Nucleic Acids Res
"scProAtlas: an atlas of multiplexed single-cell spatial proteomics imaging in human tissues"
Tiangang Wang, Xuanmin Chen, Yujuan Han, Jiahao Yi, Xi Liu, Pora Kim, Liyu Huang, Kexin Huang, Xiaobo Zhou
Nucleic Acids Res. 2024
https://doi.org/10.1093/nar/gkae990
- IMC and MIBI-TOF datasets reused are somewhat listed in Supplementary Table S6.
- however, it would have been MUCH more helpful if the authors would have given citations back to the original references (even PMIDs), as they're not listed at all in the paper's references
From the titles, I *believe* these are the references:
Spatially mapping the immune landscape of melanoma using imaging mass cytometry: 2022-Moldoveanu et al-Sci Immunol
Multiplexed imaging mass cytometry of the chemokine milieus in melanoma characterizes features of the response to immunotherapy: 2022-Hoch et al-Sci Immunol
Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry: 2018-Schulz et al-Cell Syst
Spatially variant immune infiltration scoring in human cancer tissues: 2022-Allam et al- NPJ Precis Oncol
Single-cell spatial metabolomics with cell-type specific protein profiling for tissue systems biology: 2023-Hu et al-Nat Commun
Cancer-associated fibroblast classification in single-cell and spatial proteomics data: 2023-Cords et al-Nat Commun
A comprehensive single-cell map of T cell exhaustion-associated immune environments in human breast cancer: 2023-Tietscher et al-Nat Commun
Single cell spatial analysis reveals inflammatory foci of immature neutrophil and CD8 T cells in COVID-19 lungs: 2023-Weeratunga et al-Nat Commun
Reproducible, high-dimensional imaging in archival human tissue by multiplexed ion beam imaging by time-of-flight (MIBI-TOF): 2022-Liu et al- Lab Invest
Single-cell metabolic profiling of human cytotoxic T cells: 2021-Hartmann et al- Nat Biotechnol
Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma: 2022-Risom et al-Cell
Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering: 2023-Liu et al-Nat Commun
Tiangang Wang, Xuanmin Chen, Yujuan Han, Jiahao Yi, Xi Liu, Pora Kim, Liyu Huang, Kexin Huang, Xiaobo Zhou
Nucleic Acids Res. 2024
https://doi.org/10.1093/nar/gkae990
- IMC and MIBI-TOF datasets reused are somewhat listed in Supplementary Table S6.
- however, it would have been MUCH more helpful if the authors would have given citations back to the original references (even PMIDs), as they're not listed at all in the paper's references
From the titles, I *believe* these are the references:
Spatially mapping the immune landscape of melanoma using imaging mass cytometry: 2022-Moldoveanu et al-Sci Immunol
Multiplexed imaging mass cytometry of the chemokine milieus in melanoma characterizes features of the response to immunotherapy: 2022-Hoch et al-Sci Immunol
Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry: 2018-Schulz et al-Cell Syst
Spatially variant immune infiltration scoring in human cancer tissues: 2022-Allam et al- NPJ Precis Oncol
Single-cell spatial metabolomics with cell-type specific protein profiling for tissue systems biology: 2023-Hu et al-Nat Commun
Cancer-associated fibroblast classification in single-cell and spatial proteomics data: 2023-Cords et al-Nat Commun
A comprehensive single-cell map of T cell exhaustion-associated immune environments in human breast cancer: 2023-Tietscher et al-Nat Commun
Single cell spatial analysis reveals inflammatory foci of immature neutrophil and CD8 T cells in COVID-19 lungs: 2023-Weeratunga et al-Nat Commun
Reproducible, high-dimensional imaging in archival human tissue by multiplexed ion beam imaging by time-of-flight (MIBI-TOF): 2022-Liu et al- Lab Invest
Single-cell metabolic profiling of human cytotoxic T cells: 2021-Hartmann et al- Nat Biotechnol
Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma: 2022-Risom et al-Cell
Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering: 2023-Liu et al-Nat Commun