2024-Su et al-preprint

[mleipold]

"The single-cell spatial landscape of stage III colorectal cancers"
Andrew Su, HoJoon Lee, Minh Tran, Richard dela Cruz, Anuja Sathe, Xiangqi Bai, Ignacio Wichmann, Lance Pflieger, Bryce Moulton, Tyler Barker, Derrick Haslem, David Jones, Lincoln Nadauld, Quan Nguyen, Hanlee Ji, Terence Rhodes
bioRxiv, posted November 11, 2024
https://doi.org/10.1101/2024.11.07.622577

- will update when/if this is peer-reviewed and published

- Zenodo https://doi.org/10.5281/zenodo.13901180
- "The Seurat and Scanpy objects for single-cell data, along with a CSV file containing coordinates and cell types for all single cells, have been deposited. Additionally, the original IMC image data has also been uploaded."
- IMC appear to be in tar.gz file?

[mleipold]

Downloaded *.tar.gz; during unpacking there appear to be MCD and TXT files.

- however, at least using the Archive Utility or The Unarchiver apps on MacOS, I cannot get it to extract. As far as I can tell, there's a problem with the CR055.mcd file, which causes extraction to fail due to "The archive file is incomplete". See attached screenshots.