CyTOF data analysis
Forum rules
Please be as geeky as possible. Reference, reference, reference.
Also, please note that this is a mixed bag of math-gurus and mathematically challenged, so choose your words wisely
Please be as geeky as possible. Reference, reference, reference.
Also, please note that this is a mixed bag of math-gurus and mathematically challenged, so choose your words wisely
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- Kappa & LAmbda clones in CyTOF
by msinger » Tue Feb 15, 2022 7:59 pm - 2 Replies
- 69223 Views
- Last post by DannyG
Fri Aug 05, 2022 7:17 pm
- Kappa & LAmbda clones in CyTOF
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- Topics
- Replies
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- Concerns about populations during manual gating
by DanielUMA » Mon Oct 07, 2024 7:27 am - 5 Replies
- 785 Views
- Last post by ChantelMcS
Thu Oct 10, 2024 3:16 pm
- Concerns about populations during manual gating
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- CyTOF gating tools
by JamesW » Thu Sep 19, 2024 9:20 am - 2 Replies
- 1558 Views
- Last post by JamesW
Fri Sep 20, 2024 6:43 am
- CyTOF gating tools
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- Median transformation?
by bumpCyto » Mon Feb 19, 2024 4:25 pm
- 5 Replies
- 17686 Views
- Last post by mleipold
Wed Feb 21, 2024 11:21 pm
- Median transformation?
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- Concatenating a large number of samples
by loukias » Wed Dec 06, 2023 11:50 am - 7 Replies
- 12445 Views
- Last post by loukias
Tue Dec 12, 2023 12:58 pm
- Concatenating a large number of samples
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- Apply adjusted scaling settings to new data in flowjo
by Willem » Thu Apr 27, 2023 9:04 am - 1 Replies
- 6161 Views
- Last post by mleipold
Thu Jul 13, 2023 5:55 pm
- Apply adjusted scaling settings to new data in flowjo
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- Order of operations for implementing PeacoQC?
by mleipold » Thu Jul 13, 2023 5:08 pm - 0 Replies
- 3083 Views
- Last post by mleipold
Thu Jul 13, 2023 5:08 pm
- Order of operations for implementing PeacoQC?
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- file ... seems to be corrupted.
by sgranjeaud » Thu Apr 27, 2023 3:16 pm - 0 Replies
- 3914 Views
- Last post by sgranjeaud
Thu Apr 27, 2023 3:16 pm
- file ... seems to be corrupted.
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- Weird concatenation issue
by aph123 » Tue Mar 14, 2023 8:44 am - 2 Replies
- 5413 Views
- Last post by aph123
Thu Mar 16, 2023 3:04 pm
- Weird concatenation issue
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- HIMC Controls-LiveIntactSinglets now in FR
by mleipold » Mon Mar 13, 2023 5:47 pm - 0 Replies
- 3432 Views
- Last post by mleipold
Mon Mar 13, 2023 5:47 pm
- HIMC Controls-LiveIntactSinglets now in FR
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- Measurement of conjugated antibody metal content with Helios
by JennyChuang » Thu Mar 02, 2023 11:38 am - 2 Replies
- 4463 Views
- Last post by JennyChuang
Fri Mar 03, 2023 9:56 am
- Measurement of conjugated antibody metal content with Helios
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- Differential Expression in Nowicka et al., workflow
by smakatsa » Wed Mar 01, 2023 10:53 pm - 0 Replies
- 3485 Views
- Last post by smakatsa
Wed Mar 01, 2023 10:53 pm
- Differential Expression in Nowicka et al., workflow
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- Create design & contrast matrix for differential state analy
by SteinErik » Fri Aug 26, 2022 12:17 pm - 0 Replies
- 4655 Views
- Last post by SteinErik
Fri Aug 26, 2022 12:17 pm
- Create design & contrast matrix for differential state analy
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- CytoNORM question
by marthabrainard1 » Wed Jun 29, 2022 3:46 pm - 2 Replies
- 4971 Views
- Last post by marthabrainard1
Tue Aug 02, 2022 5:16 pm
- CytoNORM question
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- Unable to download data from the repository
by sinhaanirban » Mon Jul 25, 2022 8:32 pm - 2 Replies
- 5470 Views
- Last post by mleipold
Wed Jul 27, 2022 4:10 pm
- Unable to download data from the repository
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- FlowRepository down?
1, 2 by mleipold » Thu Aug 19, 2021 3:05 pm
- 14 Replies
- 16586 Views
- Last post by ErgunTiryaki
Thu Jul 21, 2022 6:58 pm
- FlowRepository down?
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- CytoNorm Anchor Contents for Immunotherapy Sample Analysis
by LukaTandaric » Thu Jul 21, 2022 8:53 am - 0 Replies
- 4300 Views
- Last post by LukaTandaric
Thu Jul 21, 2022 8:53 am
- CytoNorm Anchor Contents for Immunotherapy Sample Analysis
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- normalization of marker expression viSNE
by juliam » Tue Jun 14, 2022 10:26 pm - 2 Replies
- 4916 Views
- Last post by sgranjeaud
Wed Jun 15, 2022 9:17 am
- normalization of marker expression viSNE
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- Average overlap frequency/ staining index
by marthabrainard1 » Thu Feb 17, 2022 10:47 pm - 1 Replies
- 4913 Views
- Last post by tomash
Thu Feb 17, 2022 11:46 pm
- Average overlap frequency/ staining index
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- Batch alignment for whole blood studies
by tomash » Fri Jan 22, 2021 2:52 am - 2 Replies
- 6162 Views
- Last post by KHLACU
Fri Jan 07, 2022 5:49 am
- Batch alignment for whole blood studies
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- Changing % T cells in solid tumor model
by kurtOK » Mon Dec 27, 2021 5:58 pm - 2 Replies
- 5130 Views
- Last post by mleipold
Wed Jan 05, 2022 9:40 pm
- Changing % T cells in solid tumor model
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- Bone marrow CD45 dim population
by JoDFCI » Thu Oct 21, 2021 12:20 pm
- 2 Replies
- 5646 Views
- Last post by tomash
Mon Oct 25, 2021 10:26 pm
- Bone marrow CD45 dim population
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- Time axis cut off: >60% events below zero
by marthabrainard1 » Wed Aug 25, 2021 5:31 pm
- 3 Replies
- 7091 Views
- Last post by mleipold
Wed Aug 25, 2021 10:01 pm
- Time axis cut off: >60% events below zero
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- Extracting each push from IMD
by rgrenfell » Thu May 20, 2021 3:49 pm - 4 Replies
- 6831 Views
- Last post by mleipold
Fri May 21, 2021 3:30 pm
- Extracting each push from IMD
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- get geometric mean back for cytof data?
by xwxdazhong » Thu Mar 07, 2019 12:04 am
- 7 Replies
- 11950 Views
- Last post by meeklu
Wed May 19, 2021 9:47 am
- get geometric mean back for cytof data?
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- data representation
by juliam » Sat Jan 30, 2021 9:28 pm - 7 Replies
- 9427 Views
- Last post by tomash
Fri Apr 02, 2021 11:48 pm
- data representation
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