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2021-Roca et al-preprint

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mleipold

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Posts: 5701

Joined: Fri Nov 01, 2013 5:30 pm

Location: Stanford HIMC, CA, USA

Post Mon Apr 11, 2022 6:54 pm

2021-Roca et al-preprint

"A Cross Entropy test allows quantitative statistical comparison of t-SNE and UMAP representations"
Carlos P. Roca, Oliver T. Burton, Julika Neumann, Samar Tareen, Carly E. Whyte, Stéphanie Humblet-Baron, Adrian Liston
arXiv, posted 8 Dec 2021
https://doi.org/10.48550/arXiv.2112.04172

- will update when/if this is peer-reviewed and published

- reuses FR-FCM-Z34U from 2021-Pentilla et al-Cell Mol Life Sci
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mleipold

Guru

Posts: 5701

Joined: Fri Nov 01, 2013 5:30 pm

Location: Stanford HIMC, CA, USA

Post Thu Feb 23, 2023 3:53 pm

Re: 2021-Roca et al-preprint

Now published:

Cell Rep Methods. 2023, 3, 100390
https://doi.org/10.1016/j.crmeth.2022.100390
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sgranjeaud

Master

Posts: 123

Joined: Wed Dec 21, 2016 9:22 pm

Location: Marseille, France

Post Thu Feb 23, 2023 5:14 pm

Re: 2021-Roca et al-preprint

- mass cytometry dataset https://flowrepository.org/id/FR-FCM-Z34U
- high dimensional flow cytometry in mice dataset https://flowrepository.org/id/FR-FCM-Z48W
- single cell sequencing dataset: EGAS00001004717 https://ega-archive.org/search-results. ... 0001004717

- script on GitHub at https://github.com/AdrianListon/Cross-Entropy-test

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