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2021-Feyaerts et al-preprint

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mleipold

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Location: Stanford HIMC, CA, USA

Post Fri Feb 12, 2021 6:02 pm

2021-Feyaerts et al-preprint

"Integrated plasma proteomic and single-cell immune signaling network signatures demarcate mild, moderate, and severe COVID-19"
Dorien Feyaerts, Julien Hedou, Joshua Gillard, Han Chen, Eileen S Tsai, Laura S Peterson, Kazuo Ando, Monali Manohar, Evan Do, Gopal K.R. Dhondalay, Jessica Fitzpatrick, Maja Artandi, Iris Chang, Theo T Snow, R Sharon Chinthrajah, Christopher M Warren, Rich Wittman, Justin G Meyerowitz, Edward A Ganio, Ina A Stelzer, Xiaoyuan Han, Franck Verdonk, Dyani K Gaudilliere, Nilanjan Mukherjee, Amy S Tsai, Kristen K Rumer, Sizun J Jiang, View ORCID ProfileSergio I Valdes-Ferrer, J. Daniel Kelly, David Furman, Nima Aghaeepour, Martin S Angst, Scott D Boyd, Benjamin A Pinsky, Garry P Nolan, Kari C Nadeau, Brice Gaudilliere, David R McIlwain
bioRxiv, posted February 12, 2021
https://doi.org/10.1101/2021.02.09.430269

- will update when/if this is peer-reviewed and published

"Data availability
Raw data, processed data, and source code for the reproduction of the results will be made publicly available on Flowrepository (ID: FR-FCM-Z3G5) and Github."
"Sorry, you do not have access to the specified experiment."
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mleipold

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Posts: 5461

Joined: Fri Nov 01, 2013 5:30 pm

Location: Stanford HIMC, CA, USA

Post Mon Jul 18, 2022 2:48 pm

Re: 2021-Feyaerts et al-preprint

Now published:

Cell Rep Med. 2022
https://doi.org/10.1016/j.xcrm.2022.100680

- "Data and code availability Raw data (FCS file), original data (Olink plasma proteomic data), processed data (cell frequency, phosphosignal, and chord diagram correlation matrix data), patient characteristics, and Generalized Additive Model (GAM) p values have been deposited to Dryad: https://doi.org/10.5061/dryad.9cnp5hqmn.

- DOI not working
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mleipold

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Posts: 5461

Joined: Fri Nov 01, 2013 5:30 pm

Location: Stanford HIMC, CA, USA

Post Wed Oct 19, 2022 3:43 pm

Re: 2021-Feyaerts et al-preprint

Dryad DOI now working

Flowrepository (ID: FR-FCM-Z3G5): "Sorry, the specified experiment was not found."; presumably the Dryad link substituted for that in the final paper
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mleipold

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Posts: 5461

Joined: Fri Nov 01, 2013 5:30 pm

Location: Stanford HIMC, CA, USA

Post Fri Dec 16, 2022 8:09 pm

Re: 2021-Feyaerts et al-preprint

Some files available on Immport SDY2129

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