IMD File Analysis
Hello -
Does anyone have an easy way to extract intensity data from IMD files without processing them through the CyTOF software? I don't want to just see events that are above threshold, I'm interested in looking at all collected data prior to this type of filtering. In particular, I'm interested in looking at mass cytometry data similarly to the way Zunder shows in the 2015 nature protocol barcoding paper (supplementary figure 2). Is there a particular software (i.e. matlab) that is well suited for this kind of data?
Also - can anyone comment on the technical details of the noise reduction option in acquisition parameters?
Thanks!
Heather
Does anyone have an easy way to extract intensity data from IMD files without processing them through the CyTOF software? I don't want to just see events that are above threshold, I'm interested in looking at all collected data prior to this type of filtering. In particular, I'm interested in looking at mass cytometry data similarly to the way Zunder shows in the 2015 nature protocol barcoding paper (supplementary figure 2). Is there a particular software (i.e. matlab) that is well suited for this kind of data?
Also - can anyone comment on the technical details of the noise reduction option in acquisition parameters?
Thanks!
Heather