FlowSOM Help
Hi All,
I am admittedly a biologist trying to tread water in the new waters of bioinformatics.
I recently have learned some R and wanted to apply that knowledge to test out the FlowSOM package. I seemed to have been able to generate a tSNE and MST, but am really frustrated in now knowing how to fix the legend so it is a column instead of a circle or at least make it larger so it is readable. Also is there a way to make the piecharts to fill the whole node? They are also small and hard to see in this current format. I'm attaching my plot and also below is my PlotStar code:
PlotStars(fSOM, markers = c(31,38,35,36,45,48,53), view="tSNE",backgroundValues = NULL, backgroundColor = function(n) {
grDevices::rainbow(n, alpha = 0.3) }, backgroundLim = NULL, legend = TRUE,
query = NULL, main = "")