Post Tue Aug 13, 2019 3:26 pm

Compare results from different technologies


We would like to compare and contrast populations/clusters found between different single cell technologies such as suspension mass / fluorescence flow, scRNA seq and multiplexed tissue imaging.

We have analysed similar samples using different technologies and we are trying to set up a pipeline to measure variations in sub-populations abundance and marker expression within similar clusters obtained from these analysers, and compare in this way their results. We are trying QFMatch for the first task and MEM, cytoftree and HippoPanda for the second. I would like to know if there is a current approach for doing this kind of comparisons.

Kind regards