SPADE script to install package in R
BiocManager ::install("spade")
Bioconductor version 3.8 (BiocManager 1.30.4), R 3.5.2 (2018-12-20)
Installing package(s) 'spade'
installation path not writeable, unable to update packages: class, codetools,
mgcv
My understanding is that SPADE has been removed from Bioconductor, hence the script above did not result in successful installation.
Would any of you know whether it is still possible to install SPADE in R, and if so, could you suggest a script? We are moving away from SPADE in favor of FlowSOM, however we might still want to run a SPADE analysis once in a while.
Thank you,
Florence