Post Sat Nov 17, 2018 6:13 pm

CytofKit error messages

Hello,

I wonder if anyone can help me with the below message at all please.
I am using the Cytofkit core function in R.

"Error in if (nchar(shape_string[1]) <= 1) { :
missing value where TRUE/FALSE needed
In addition: Warning message:
Removed 155000 rows containing missing values (geom_point)"

I have no idea what this means! I get the Rdata file that can be successfully loaded in Shiny APP, but no fcs files.
I have 5000 events x 57 fcs files from FlowJO, as my input, RPhenograph clustering k=30.

Packages:-
Cytofkit 1.12.0
FlowCore 1.49.2

If I try a much smaller data set, I do get fcs files produced and this message doesn't appear, although as per others, I can't view these 'sensibly' in FlowJo 10.5.3.

Any thoughts gratefully received please.
Maybe it's the data set size?