2016-Giecold et al-Nucl. Acids Res.
"Robust lineage reconstruction from high-dimensional single-cell data"
Gregory Giecold, Eugenio Marco, Sara P. Garcia, Lorenzo Trippa, and Guo-Cheng Yuan
Nucl. Acids Res. 2016, 44, e122
http://dx.doi.org/10.1093/nar/gkw452
- posting this because it uses the Bendall et al Science 2011 CyTOF dataset for Fig 5 and Fig 6 (also Suppl Fig S2), comparing their method against SPADE.
- That said, the SPADE trees in their Suppl Fig S2 look funny: minimally they didn't reposition the nodes when the edges/lines overlapped.
- I'll leave it up to the computational people to split this back out into a thread in another forum to discuss.
Gregory Giecold, Eugenio Marco, Sara P. Garcia, Lorenzo Trippa, and Guo-Cheng Yuan
Nucl. Acids Res. 2016, 44, e122
http://dx.doi.org/10.1093/nar/gkw452
- posting this because it uses the Bendall et al Science 2011 CyTOF dataset for Fig 5 and Fig 6 (also Suppl Fig S2), comparing their method against SPADE.
- That said, the SPADE trees in their Suppl Fig S2 look funny: minimally they didn't reposition the nodes when the edges/lines overlapped.
- I'll leave it up to the computational people to split this back out into a thread in another forum to discuss.