Post Fri Apr 14, 2023 7:59 pm

2023-Becker et al-Nat Comput Sci

"Large-scale correlation network construction for unraveling the coordination of complex biological systems"
Martin Becker, Huda Nassar, Camilo Espinosa, Ina A. Stelzer, Dorien Feyaerts, Eloise Berson, Neda H. Bidoki, Alan L. Chang, Geetha Saarunya, Anthony Culos, Davide De Francesco, Ramin Fallahzadeh, Qun Liu, Yeasul Kim, Ivana Marić, Samson J. Mataraso, Seyedeh Neelufar Payrovnaziri, Thanaphong Phongpreecha, Neal G. Ravindra, Natalie Stanley, Sayane Shome, Yuqi Tan, Melan Thuraiappah, Maria Xenochristou, Lei Xue, Gary Shaw, David Stevenson, Martin S. Angst, Brice Gaudilliere & Nima Aghaeepour
Nat Comput Sci 2023
https://doi.org/10.1038/s43588-023-00429-y

- "The single-cell dataset used to derive the benchmark dataset single cell and to support the findings is available from FlowRepository (http://flowrepository.org/id/FR-FCM-ZY3Q)."
- this is 2017-Aghaeepour et al-Sci Immunol

However, Preeclampsia Ref 24, 26 and Pregnancy Ref 6 contain CyTOF data: not completely clear if reused

Preeclampsia Ref 24: 2019-Han et al-Front Immunol - FlowRepository FR-FCM-ZYRQ
Preeclampsia Ref 26: 2022-Marić et al-Patterns; no dataset accession given in original paper
Pregnancy Ref 6: 2019-Ghaemi et al-Bioinformatics; this also appears to be 2017-Aghaeepour et al-Sci Immunol