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2022-Amouzgar et al-preprint

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mleipold

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Posts: 5796

Joined: Fri Nov 01, 2013 5:30 pm

Location: Stanford HIMC, CA, USA

Post Fri Jan 07, 2022 5:07 pm

2022-Amouzgar et al-preprint

"Supervised dimensionality reduction for exploration of single-cell data by Hybrid Subset Selection - Linear Discriminant Analysis"
Meelad Amouzgar, David R Glass, Reema Baskar, Inna Averbukh, Samuel C Kimmey, Albert G Tsai, Felix J Hartmann, Sean C Bendall
bioRxiv, posted January 06, 2022
https://doi.org/10.1101/2022.01.06.475279

- will update when/if this is peer-reviewed and published

- uses datasets from:
1. Morphometry: 2020-Tsai et al-Nat Med
2. T-cell metabolic regulome: 2020-Hartmann et al-Nat Biotechnol
3. Chromotyping: Baskar-unpublished

"Data availability.
All data used will be published and available on public repositories. The BioRxiv for Kimmey et al.,
2022 and Baskar et al., 2022 are in process"
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mleipold

Guru

Posts: 5796

Joined: Fri Nov 01, 2013 5:30 pm

Location: Stanford HIMC, CA, USA

Post Mon Jun 27, 2022 2:39 pm

Re: 2022-Amouzgar et al-preprint

Now published:

Patterns 2022
https://doi.org/10.1016/j.patter.2022.100536

"The endoderm differentiation dataset is derived from a manuscript in preparation, and the minimum data used are available in the “manuscript” folder of the published HSS-LDA github repo. The “Morphometry” data are available as five links in FlowRepository: https://flowrepository.org/ searchable with keyword “morphometry.” The “T cell metabolic regulome” repository is Zenodo: https://doi.org/10.5281/zenodo.3951613. The “Chromotyping” manuscript is under preparation, and the corresponding data used in this paper have been deposited at FlowRepository: https://flowrepository.org/id/FR-FCM-Z5EA.

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