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2022-Lo et al-Nat Commun

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mleipold

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Post Fri Feb 18, 2022 4:55 pm

2022-Lo et al-Nat Commun

"CytofIn enables integrated analysis of public mass cytometry datasets using generalized anchors"
Yu-Chen Lo, Timothy J Keyes, Astraea Jager, Jolanda Sarno, Pablo Domizi, Ravindra Majeti, Kathleen M Sakamoto, Norman Lacayo, Charles G Mullighan, Jeffrey Waters, Bita Sahaf, Sean C Bendall, Kara L Davis
Nat Commun. 2022, 13, 934
https://doi.org/10.1038/s41467-022-28484-5

"The datasets for integrative comparative analysis were retrieved from the repositories, “CyTOF mass cytometry of human glioma, kidney cancer, sarcoma, PBMC” (FlowRepository ID: FR-FCM-Z3HK),” Single-cell map of diverse immune phenotypes in the breast tumor microenvironment” (FlowRepository ID:FR-FCM-ZYJP),”Mass Cytometry of Peripheral Blood from Melanoma Patients Receiving anti-PD-1” (FlowRepository ID: FR-FCM-ZYDG) and “On-therapy PBMC samples” (FlowRepository ID: FR-FCM-ZYQR) and can be accessed from the FlowRepository database (https://flowrepository.org/)50. Source data underlying Figs. 2–5 i.e., the healthy control samples, raw leukemia patient samples, and lymphoma patient samples used for the CytofIn validation study are available at Zendo [https://doi.org/10.5281/zenodo.5911417]."

FR-FCM-Z3HK: 2020-Simonds et al-preprint (2021-Simonds et al-J Immunother Cancer)
FR-FCM-ZYJP: 2018-Azizi et al-Cell
FR-FCM-ZYDG: 2019-Greenplate et al-Cancer Immunol Res
FR-FCM-ZYQR: 2019-Wei et al-Proc Natl Acad Sci USA
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mleipold

Guru

Posts: 4070

Joined: Fri Nov 01, 2013 5:30 pm

Location: Stanford HIMC, CA, USA

Post Wed Nov 23, 2022 8:54 pm

Re: 2022-Lo et al-Nat Commun

Also files here:

FR-FCM-Z42C: CytofIN Validation Dataset
FR-FCM-Z427: CytofIN Sample Dataset

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