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2021-Bost et al-preprint

PostPosted: Mon Nov 29, 2021 4:28 pm
by mleipold
"Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation"
Pierre Bost, Daniel Schulz, Stefanie Engler, Clive Wasserfall, Bernd Bodenmiller
bioRxiv, posted November 28, 2021

- will update when/if this is peer-reviewed and published

- appears to generate a new IMC dataset; no accession given
- appears to reuse an IMC dataset and mentions Zenodo, but no reference or accession given

Re: 2021-Bost et al-preprint

PostPosted: Thu Jan 05, 2023 8:17 pm
by mleipold
Now published:

Nat Methods. 2022

- "Data availability Raw and processed human lymph node IMC datasets generated for this article are freely available on Mendeley ("

- "Breast cancer IMC data re-analysis The SingleCellExperiment object containing single-cell information from 100 FoVs, each one derived from a different sample, was downloaded from the Zenodo platform ("; this is 2020-Jackson et al-Nature