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2021-Doliba et al-preprint

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mleipold

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Posts: 5796

Joined: Fri Nov 01, 2013 5:30 pm

Location: Stanford HIMC, CA, USA

Post Tue Oct 19, 2021 3:47 pm

2021-Doliba et al-preprint

"Alpha cell dysfunction in early type 1 diabetes"
Nicolai M Doliba, Andrea V Rozo, Jeffrey Roman, Wei Qin, Daniel Traum, Long Gao, Jinping Liu, Elisabetta Manduchi, Chengyang Liu, Maria L Golson, Golnaz Vahedi, Ali Naji, Franz M Matschinsky, Mark A. Atkinson, Alvin C Powers, Marcela Brissova, Klaus H Kaestner, Doris A Stoffers, for the HPAP Consortium
bioRxiv, posted October 16, 2021
https://doi.org/10.1101/2021.10.15.464545

- "Data and code availability

This paper analyzes existing, publicly available data generated by the authors. Raw image data for imaging mass cytometry, detailed clinical information, solution CyTOF as well as transcriptome and perifusion data are available from PancDB (https://hpap.pmacs.upenn.edu). Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request"

- looking at the PancDB, you need to select "Donors and Data" at the top left, then "Download data". The default view appears to be by patient, and then toggle down to eventually find the suspension CyTOF and IMC files. However, if you toggle the tab to "HPAP Category", then it's organized by assay type rather than donor.
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mleipold

Guru

Posts: 5796

Joined: Fri Nov 01, 2013 5:30 pm

Location: Stanford HIMC, CA, USA

Post Tue Dec 06, 2022 5:58 pm

Re: 2021-Doliba et al-preprint

Published:

J Clin Invest. 2022, 132, e156243
https://doi.org/10.1172/jci156243

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