Post Wed Mar 13, 2024 4:41 pm

2024-Chen and Murphy-preprint

"3DCellComposer - A Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation"
Haoran Chen, Robert F. Murphy
bioRxiv, posted March 12, 2024
https://doi.org/10.1101/2024.03.08.584082

- will update when/if this is peer-reviewed and published

- IMC from HuBMAP project:
lymph node: HBM387.XZWR.467 https://portal.hubmapconsortium.org/bro ... a495becf3e
thymus: HBM778.VHHR.349 https://portal.hubmapconsortium.org/bro ... 7588eccf81
spleen: HBM459.CGSD.533 https://portal.hubmapconsortium.org/bro ... 15a3120b7a

- appear to be the three "3D Imaging Mass Cytometry" datasets here: https://portal.hubmapconsortium.org/search?entity_type[0]=Dataset, left panel "3D Imaging Mass Cytometry"
https://portal.hubmapconsortium.org/sea ... me_keyword[3D%20Imaging%20Mass%20Cytometry][0]=Imaging%20Mass%20Cytometry%20%283D%29&entity_type[0]=Dataset