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2021-González-Solares et al-preprint

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mleipold

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Posts: 5796

Joined: Fri Nov 01, 2013 5:30 pm

Location: Stanford HIMC, CA, USA

Post Thu Jun 24, 2021 4:23 pm

2021-González-Solares et al-preprint

"The Imaging and Molecular Annotation of Xenografts and Tumours (IMAXT) High Throughput Data and Analysis Infrastructure"
Eduardo A. González-Solares, Ali Dariush, Carlos González-Fernández, Aybüke Küpcü Yoldaş, Mohammad Al Sa'd, Neil Millar, Tristan Whitmarsh, Nicholas Chornay, Ilaria Falciatori, Atefeh Fatemi, Daniel Goodwin, Laura Kuett, Claire M. Mulvey, Marta Páez Ribes, Fatime Qosaj, Andrew Roth, Ignacio Vázquez-García, Spencer S. Watson, Jonas Windhager, Samuel Aparicio, Bernd Bodenmiller, Ed Boyden, Carlos Caldas, Owen Harris, Sohrab P. Shah, Simon Tavaré, CRUK IMAXT Grand Challenge Team, Dario Bressan, Gregory J. Hannon, Nicholas A Walton
bioRxiv, posted June 23, 2021
https://doi.org/10.1101/2021.06.22.448403

- will update when/if this is peer-reviewed and published

- https://imaxt.ast.cam.ac.uk/release
" IMAXT Data Release 1 (IDR1) #

This release contains the raw STPT, whole-slide scanning and IMC data for all models, as well as the re-projected whole-slide and IMC data, the segmentation masks, the cell catalogues, and the final dataset in anndata and seeurat format.

These datasets are described in the following manuscripts:

Bressan, D. et al., Exploration and analysis of molecularly annotated, single cell 3D models of breast cancer in virtual reality, Nature Cancer, 2021
Gonzalez-Solares, E. et al., The Imaging and Molecular Annotation of Xenografts and Tumors (IMAXT) High Throughput Data and Analysis Infrastructure, Nature Cancer, 2021
"

I don't think either of the Nature Cancer papers are released yet (can't find them in Pubmed nor on Nature Cancer website.
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mleipold

Guru

Posts: 5796

Joined: Fri Nov 01, 2013 5:30 pm

Location: Stanford HIMC, CA, USA

Post Mon May 01, 2023 7:40 pm

Re: 2021-González-Solares et al-preprint

Now published:

Biol Imaging, 2023
https://doi.org/10.1017/S2633903X23000090

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