Sat Jun 06, 2020 8:15 am
2020-Rebhahn et al-Commun Biol
"SwiftReg cluster registration automatically reduces flow cytometry data variability including batch effects"
Jonathan A. Rebhahn, Sally A. Quataert, Gaurav Sharma, Tim R. Mosmann
Communications Biology. 2020, 3, 218
https://doi.org/10.1038/s42003-020-0938-9
Data availability
Fluorescence samples: JMW090 (8 samples) https://flowrepository.org/id/FR-FCM-ZZ8W; JMW090 (40 samples) https://flowrepository.org/id/FR-FCM-Z284; JMW092 https://flowrepository.org/id/FR-FCM-Z283; and HVTN080 https://flowrepository.org/id/FR-FCM-ZZ7U.
CyTOF samples: SDY420 https://www.immport.org/shared/study/SDY420 and SDY420 Metadata (https://doi.org/10.5281/zenodo.3733491).
All relevant data generated and analyzed are available from the authors upon reasonable request.
Code availability
swiftReg is included in the SWIFT package, freely available for download at http://www.ece.rochester.edu/projects/s ... SWIFT.html
Jonathan A. Rebhahn, Sally A. Quataert, Gaurav Sharma, Tim R. Mosmann
Communications Biology. 2020, 3, 218
https://doi.org/10.1038/s42003-020-0938-9
Data availability
Fluorescence samples: JMW090 (8 samples) https://flowrepository.org/id/FR-FCM-ZZ8W; JMW090 (40 samples) https://flowrepository.org/id/FR-FCM-Z284; JMW092 https://flowrepository.org/id/FR-FCM-Z283; and HVTN080 https://flowrepository.org/id/FR-FCM-ZZ7U.
CyTOF samples: SDY420 https://www.immport.org/shared/study/SDY420 and SDY420 Metadata (https://doi.org/10.5281/zenodo.3733491).
All relevant data generated and analyzed are available from the authors upon reasonable request.
Code availability
swiftReg is included in the SWIFT package, freely available for download at http://www.ece.rochester.edu/projects/s ... SWIFT.html