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2019-Bagwell et al-Cytometry B Clin Cytom

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mleipold

Guru

Posts: 4070

Joined: Fri Nov 01, 2013 5:30 pm

Location: Stanford HIMC, CA, USA

Post Mon Nov 25, 2019 4:25 pm

2019-Bagwell et al-Cytometry B Clin Cytom

"Multi-site reproducibility of a human immunophenotyping assay in whole blood and peripheral blood mononuclear cells preparations using CyTOF technology coupled with Maxpar Pathsetter, an automated data analysis system"
Bagwell CB, Hunsberger B, Hill B, Herbert D, Bray C, Selvanantham T, Li S, Villasboas JC, Pavelko K, Strausbauch M, Rahman A, Kelly G, Asgharzadeh S, Gomez-Cabrero A, Behbehani G, Chang H, Lyberger J, Montgomery R, Zhao Y, Inokuma M, Goldberger O, Stelzer G
Cytometry B Clin Cytom. 2019
https://doi.org/10.1002/cyto.b.21858

- no dataset accession number given
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dtelad11

Master

Posts: 129

Joined: Mon Oct 31, 2016 6:26 pm

Post Mon Nov 25, 2019 4:30 pm

Re: 2019-Bagwell et al-Cytometry B Clin Cytom

I hope Fluidigm makes the data publicly available -- it will be very helpful to other method developers.
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Verhoeff

Participant

Posts: 19

Joined: Wed Mar 02, 2016 10:25 am

Post Wed Jan 15, 2020 12:40 pm

Re: 2019-Bagwell et al-Cytometry B Clin Cytom

This seems like the same data as Fluidigm used for the white paper on the DIP panel, of which a part was made available on Cytobank (I took it from the Premium server, don't know if it is on the public one) under the name Fluidigm_Maxpar Direct Immune Profiling Assay_201325_Gating Example_v1.0 (Public)

The filenames don't seem to directly match the files listed in the paper though, maybe one of the authors can attest to what happened?

Cheers,
Jan
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dtelad11

Master

Posts: 129

Joined: Mon Oct 31, 2016 6:26 pm

Post Wed Jan 15, 2020 4:41 pm

Re: 2019-Bagwell et al-Cytometry B Clin Cytom

I have heard that the data is available on Premium Cytobank, unfortunately many people cannot access that. I hope that Fluidigm can supply it through open means such as FlowRepository.
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mleipold

Guru

Posts: 4070

Joined: Fri Nov 01, 2013 5:30 pm

Location: Stanford HIMC, CA, USA

Post Thu Nov 17, 2022 8:46 pm

Re: 2019-Bagwell et al-Cytometry B Clin Cytom


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