CyTOF data analysis
Forum rules
Please be as geeky as possible. Reference, reference, reference.
Also, please note that this is a mixed bag of math-gurus and mathematically challenged, so choose your words wisely
Please be as geeky as possible. Reference, reference, reference.
Also, please note that this is a mixed bag of math-gurus and mathematically challenged, so choose your words wisely
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- Kappa & LAmbda clones in CyTOF
by msinger » Tue Feb 15, 2022 7:59 pm - 2 Replies
- 11054 Views
- Last post by DannyG
Fri Aug 05, 2022 7:17 pm
- Kappa & LAmbda clones in CyTOF
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- Topics
- Replies
- Views
- Last post
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- Dataset release
by mleipold » Mon Jan 04, 2021 4:11 pm - 0 Replies
- 1520 Views
- Last post by mleipold
Mon Jan 04, 2021 4:11 pm
- Dataset release
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- FlowJO transformation before clustering
by LouisS » Mon Aug 03, 2020 8:57 pm
- 7 Replies
- 10407 Views
- Last post by chasman
Fri Nov 06, 2020 8:57 pm
- FlowJO transformation before clustering
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- Recommendation on an example data
by jonsnow » Tue Nov 03, 2020 4:36 pm - 2 Replies
- 2833 Views
- Last post by jonsnow
Tue Nov 03, 2020 10:03 pm
- Recommendation on an example data
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- Data pre-processing
by selitsky » Thu Apr 26, 2018 12:28 pm - 9 Replies
- 9794 Views
- Last post by tomash
Tue Nov 03, 2020 7:04 am
- Data pre-processing
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- Problems with Cytof workflow (Nowicka et al)
1, 2by nkhanbham » Wed Aug 01, 2018 2:15 pm - 14 Replies
- 12317 Views
- Last post by juliam
Mon Nov 02, 2020 5:18 pm
- Problems with Cytof workflow (Nowicka et al)
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- Uploading gates to cytobank
by marthabrainard » Wed Oct 07, 2020 6:01 pm - 0 Replies
- 2034 Views
- Last post by marthabrainard
Wed Oct 07, 2020 6:01 pm
- Uploading gates to cytobank
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- Concatenating FCS files
by komal2000 » Thu Sep 17, 2020 8:23 am - 5 Replies
- 3213 Views
- Last post by komal2000
Fri Sep 18, 2020 7:38 am
- Concatenating FCS files
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- Cytosplore crashes with Mass Cytometry files
by Giorgio » Thu Sep 10, 2020 3:21 pm - 1 Replies
- 2578 Views
- Last post by mleipold
Thu Sep 10, 2020 3:32 pm
- Cytosplore crashes with Mass Cytometry files
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- Update of Rphenograph and Rtsne
by sgranjeaud » Thu Jun 11, 2020 5:18 pm - 5 Replies
- 7064 Views
- Last post by tomash
Fri Aug 21, 2020 4:50 am
- Update of Rphenograph and Rtsne
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- FCS file nomenclature and consistency
by mleipold » Tue Jul 14, 2020 4:35 pm - 0 Replies
- 1997 Views
- Last post by mleipold
Tue Jul 14, 2020 4:35 pm
- FCS file nomenclature and consistency
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- Cytofkit treats two panels edited by Premessa as different??
1, 2 by sudhcha » Fri May 08, 2020 10:23 am
- 10 Replies
- 6330 Views
- Last post by sudhcha
Mon May 11, 2020 11:39 am
- Cytofkit treats two panels edited by Premessa as different??
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- Quantile normalisation of batches
by sgranjeaud » Tue Apr 28, 2020 9:17 pm - 0 Replies
- 2174 Views
- Last post by sgranjeaud
Tue Apr 28, 2020 9:17 pm
- Quantile normalisation of batches
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- concatenatings samples from different runs-viSNE
by narulam » Mon Mar 30, 2020 1:43 am - 2 Replies
- 2889 Views
- Last post by narulam
Tue Mar 31, 2020 4:24 am
- concatenatings samples from different runs-viSNE
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- Concatenating barcoded samples from different runs
by mdmanurung » Sat Mar 21, 2020 10:15 am - 2 Replies
- 2901 Views
- Last post by sgranjeaud
Tue Mar 24, 2020 4:57 pm
- Concatenating barcoded samples from different runs
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- Auto-gating Gaussian and/or cells?
1, 2by jimbomahoney » Tue Dec 03, 2019 12:11 pm - 19 Replies
- 10080 Views
- Last post by jimbomahoney
Mon Mar 23, 2020 8:03 am
- Auto-gating Gaussian and/or cells?
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- LMA CyTOF Core Data Analysis Seminar #3
by EHaasDFCI » Wed Feb 12, 2020 12:42 pm - 1 Replies
- 2552 Views
- Last post by eganio
Wed Feb 12, 2020 3:15 pm
- LMA CyTOF Core Data Analysis Seminar #3
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- Fluidigm debarcoding metrics
by dtelad11 » Tue Jan 14, 2020 2:18 pm - 1 Replies
- 2311 Views
- Last post by EHaasDFCI
Wed Feb 12, 2020 12:38 pm
- Fluidigm debarcoding metrics
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- cytofkit: take care of file names
by sgranjeaud » Mon Jan 20, 2020 8:23 pm - 0 Replies
- 2347 Views
- Last post by sgranjeaud
Mon Jan 20, 2020 8:23 pm
- cytofkit: take care of file names
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- Randomization / randomisation consensus
by jimbomahoney » Wed Nov 13, 2019 12:49 pm
- 9 Replies
- 6016 Views
- Last post by geopap
Fri Nov 15, 2019 10:20 am
- Randomization / randomisation consensus
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- Data Analysis Seminar Series at Dana-Farber
by EHaasDFCI » Fri Oct 25, 2019 8:56 pm
- 1 Replies
- 3618 Views
- Last post by EHaasDFCI
Wed Nov 06, 2019 2:04 pm
- Data Analysis Seminar Series at Dana-Farber
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- Cytofkit removed from Bioconductor with v3.9
by markyyy » Thu Jul 18, 2019 3:50 pm - 5 Replies
- 6250 Views
- Last post by Kjwaller
Thu Oct 17, 2019 2:54 pm
- Cytofkit removed from Bioconductor with v3.9
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- Modifying channels from the FCS files
1, 2by avinash1 » Thu Sep 26, 2019 9:41 pm - 11 Replies
- 8637 Views
- Last post by dtelad11
Wed Oct 16, 2019 4:32 pm
- Modifying channels from the FCS files
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- Comparing xml files from different softwares
by komal2000 » Tue Oct 08, 2019 7:38 am - 0 Replies
- 2479 Views
- Last post by komal2000
Tue Oct 08, 2019 7:38 am
- Comparing xml files from different softwares
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- Quick overview plots like Cytobank - R script
by jimbomahoney » Tue May 28, 2019 1:58 pm - 4 Replies
- 4527 Views
- Last post by jimbomahoney
Mon Sep 30, 2019 7:33 am
- Quick overview plots like Cytobank - R script
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- Log width bar plots like PlotViewer - R script
by jimbomahoney » Fri Aug 23, 2019 7:20 am - 0 Replies
- 2319 Views
- Last post by jimbomahoney
Fri Aug 23, 2019 7:20 am
- Log width bar plots like PlotViewer - R script
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